[Back to Document View] LexisNexisª Academic Copyright 2002 Reed Business Information UK, a division of Reed Elsevier, Inc. All Rights Reserved. New Scientist July 20, 2002 SECTION: Features; ISSN. 0262 4079; Vol. 175; Pg. 3434 LENGTH: 2649 words HEADLINE: Ready for your close-up? BYLINE: Clare WilsonWorking out what someone looks like from only a DNAsample is no longer science fiction. You'd be surprised what forensics experts can already do, says Clare Wilson BODY: IT'S THE police's worst nightmare. A rapist murders his victim and leaves no clues to his identity. A semen sample from the dead woman doesn't match anything in the forensic database, and a mass screening of local men draws a blank. Stalemate. But what if there were another lead for the police to follow up? Suppose a lab analysis of the semen sample could produce a "DNA photofit" of the suspect: Caucasian, with red hair and blue eyes, a strong jaw and a cleft chin. Not exactly a smoking gun, but combine it with a bit of traditional police work, and a description like that could make all the difference. At the moment, it's not possible to generate a complete description from a scrap of DNA. But researchers are getting there, albeit in small steps. Already they can interrogate DNA for its owner's ethnic appearance, hair colour and eye colour, and research groups around the world are making progress on other physical traits, including jaw shape.Magazine Not everyone is happy with the idea. Some civil libertarians say the strategy is an invasion of privacy and could lead to miscarriages of justice. And some scientists say the complexity of the task is so great that the technique won't go much further. For a start, there might be millions of different genetic combinations that all lead to just a handful of physical types. But the British police are undeterred. DNA photofits have already helped them solve crimes. At the moment, if DNA is found at the scene of a crime, in blood, hair or semen, say, standard forensic techniques can help in two ways. If there's a suspect in custody the police can see if their DNA matches the "crime stain", as it is called. Or in the absence of a suspect, they can see if it matches the DNA of any known criminal, held in archives such as Britain's ever-growing National DNA Database. This database holds a collection of DNA samples taken from suspects the police have arrested and is already the world's largest forensic DNA archive. Both techniques have proved their worth in criminal investigations. But what if there's no suspect and no match in the archive? Ever since DNA testing was introduced, forensic scientists have wondered how much information they could wring out of a DNA sample. At the forefront of this field is Britain's Forensic Science Service, a government agency based in Birmingham that is the custodian of the National DNA Database. The FSS can already give the police clues about two aspects of someone's appearance - ethnicity and hair colour - and is funding research that could generate more detailed information from DNA. And the FSS isn't alone. Research groups around the world are making progress with the genetics of physical appearance, and the biotech industry is getting in on the act too. The biggest success story so far has been hair colour. Back in 1995, a team at Newcastle University reported the discovery of a genetic trait linked to red hair. They noticed that redheads usually have a faulty receptor protein on the surface of pigment-producing cells called melanocytes. The defect renders the cells insensitive to a hormone that instructs them to make melanin. By examining the gene for the receptor protein, they established that the defect is a recessive genetic trait: 70 per cent of redheads have two copies of a defective gene (New Scientist, 30 September 1995, p 18). The FSS has now capitalised on that result. Last year a team led by Penny Noake announced it had identified eight common mutations that cause the gene to be defective. More significantly, the team had also devised a test to pick up those mutations in crime-stain DNA. The test isn't perfect, but based on a sample of 197 Caucasians, the FSS concludes that someone who carries two of the defective genes has a 96 per cent probability of being naturally red-haired. It's not hard to see how the test could be useful to an inquiry. If the FSS tested a stain and found the signature for red hair, the police would know to concentrate their investigation on suspects with red hair - allowing for baldness, greyness, dye and so on. And a negative result would help them eliminate red-headed suspects. Importantly, the test result doesn't have to stand up in court - its only purpose is to help the police direct their investigation, not convict someone. Once they've brought someone in for questioning they can take a cheek swab and check the suspect's DNA against the crime stain. However, the red-hair test is of limited use. Only 6 per cent of people living in Britain are red-headed. What about blonde, brown and black-haired criminals? Unfortunately, it's at this point that the genetics of hair colouring spirals into bewildering complexity. Hair colour is usually determined by the cumulative effect of several genes, so there's no such thing as a single gene for blonde hair that could be turned into a simple test, for example. It's the same with eye colour. But biotech firm DNAPrint Genomics of Sarasota, Florida, is having a crack at both problems, and has made most progress so far with eye colour. Its starting point was basic research in mice and the fruit fly Drosophila that identified several genes involved in eye colour. Geneticists then looked for similar sequences in the human genome, and identified 10 candidate genes for eye colour. DNAPrint has now taken that information and turned it into a test. The firm took DNA samples from 500 volunteers and recorded their eye colour. Then it applied a technique called SNP mapping to find correlations between the two. SNP stands for "single nucleotide polymorphism" - a single "letter" change in the genetic code. These variations account for most of the genetic differences between individuals. DNAPrint sequenced the 10 candidate genes from each volunteer then sifted through the sequences looking for SNPs. It found 50 in total. Then it set computers to work out how the SNPs correlated with eye colour. Of the 10 genes, DNAPrint found that only four really matter. Chief executive Tony Frudakis says that by looking at these four genes, it can classify someone into one of three eye-colour groups - dark (black and brown), light (blue and grey), or hazel - with 97 per cent certainty. Exactly what the four genes do, and how they combine to determine eye colour remains a mystery, but that's not a problem for DNAPrint: to make a commercial test it doesn't need to know how it works, just that it does. The next challenge is hair colour. DNAPrint is applying exactly the same technique to this problem, identifying candidate genes and looking for SNPs. Frudakis says they have made some headway and can tentatively classify people as blonde, red, auburn, brown, or black-haired from their DNA alone. Back in Britain, another aspect of appearance the FSS has had success with is ethnic origin. Its starting point was the National DNA Database. Since 1995, the FSS has analysed and classified the DNA samples in a standard way. It creates a genetic fingerprint for each, using 10 regions of non-coding or "junk" DNA that are known to exist in hundreds of different variants, known as alleles. The resulting fingerprints are useful in forensics because almost everybody has a unique combination. If the fingerprints of two samples match then it's overwhelmingly likely that they come from the same person. In the mid-1990s, FSS researchers began to wonder if they could winkle out any other information from the fingerprints. One promising idea came from a piece of supplementary information recorded by police whenever they take a DNA sample: the person's ethnic origin, either Caucasian, Afro-Caribbean, South-East Asian, Indian sub-continental, or Middle Eastern. In March 1996, the FSS started analysing the entire National DNA Database to see how often each allele cropped up in each ethnic group. They found that some variations were much more common in certain groups than in others, suggesting that crime stains could provide clues to suspects' ethnic origin. Then, last year, the FSS announced that it had made this idea into a reality: it can now estimate the relative probability that a crime stain came from a member of any given ethnic group. The genetics of ethnicity, of course, is a controversial subject, with most scientists now agreed that conventional racial categories don't correspond to genuine genetic groupings (New Scientist, 20 April, p 34). But the FSS test doesn't contradict this consensus, for two good reasons. First, the DNA sequences involved are junk rather than functional genes, so they're not genes "for" ethnicity. And second, the ethnic category assigned to DNA samples is purely subjective, based on the donor's appearance. It may not tell the police anything meaningful about someone's "race", but it will tell them what they look like, which is what matters for these purposes. The ethnicity test has already been put through its paces in real investigations. Andrew Urquhart, a geneticist at the FSS, says it has been most useful in cases where there was no eyewitness evidence. "Sometimes the police have hundreds of people to screen on a case," he says. "We can say: 'Screen these people first'." Although the FSS won't discuss individual investigations, a case study published in the journal Forensic Science International (vol 119, p 17) demonstrates one way in which the ethnicity test can help. A young woman was raped by a man she described as Afro-Caribbean. The police took a swab and profiled the DNA in the semen, but they couldn't be sure it was the rapist's DNA because the victim had recently had unprotected sex with a Caucasian man who couldn't be traced. Was the semen from an Afro-Caribbean man? That is, was it worth taking DNA samples from suspects to match against the semen? The ethnicity test helped answer the question. The allele combination in the semen would be expected to occur in 1 in 3 billion Caucasians, but only 1 in 83 billion Afro-Caribbeans. In other words, the semen was more than 27 times as likely to have come from the victim's Caucasian partner than the rapist. The police decided against using DNA matching. Beyond hair and eye colour and ethnic appearance, divining physical characteristics from DNA gets more difficult. Even so, the FSS has also been pursuing the genetic basis of facial features. A few years ago it helped fund a large data-collecting exercise at University College London. Over several months, an exhibit at London's Science Museum invited visitors to leave DNA samples and have their faces scanned using 3D surface mapping. About 600 people volunteered, many from the same families. The researchers tried to break down overall facial shape into distinct features such as nose curvature or chin clefts, and correlate them to DNA sequences. But they made little progress. Just as with eye colour, there is no one gene for a big nose, so the enormous complexity of the task defeated the researchers. They did identify some candidate genes for cleft chins though, but when the lead scientist retired the project was wound down without drawing any firm conclusions. Alf Linney, reader in medical physics at UCL who was involved in the project, recalls: "The Home Office had great confidence we could do it in a couple of years, but we didn't. There are many genes involved in some of the features. The magnitude of the problem was too great." But the idea of finding genes for facial features isn't dead. Many of the genes involved in development, and therefore in physical appearance, are common to most mammals. So a gene for a large jaw in mice, for example, might very well be found in humans too. And working with mice has big advantages, since they can go through many generations in a short time, which is extremely helpful in genetic studies. What's more, bone shape can be determined very accurately once the animals are dead. One promising project has found that mice show significant variation in jaw shape and size, and has begun to unravel the genetics behind the variation. Project leader Chris Klingenberg of the University of Konstanz in Germany cautions that, as with humans, the genetics controlling jaw shape in mice is fiendishly complicated. "There are amazingly many interactions," he says. "If you change gene A, genes B and C interact in a different way with each other. And this is in a system picked for its simplicity." But the project is making some progress anyway. In one study of 535 mice it turned up 25 genes for jaw shape, another 12 for jaw size, and five more involved in jaw symmetry. And despite the mind-boggling number of possible genetic permutations this throws up, the number of physical outcomes is surprisingly small - Klingenberg has found only two basic patterns. Klingenberg says that the ultimate goal of applying this information to human faces is still a long way off. But when clues to the genetic mechanisms do emerge, the UCL work on facial features may not be in vain: their DNA samples and face scans have been archived and could be used in future research, once scientists know which genes to look for. With physical characteristics, however, genes never tell the whole story - environment plays a key role too. FSS researcher Kevin Sullivan points out that when it comes to someone's facial characteristics, "whether or not they've played rugby might have more of an influence on ear and nose shape than genes." Urquhart agrees: "There are an awful lot of caveats. Someone could be bald or dye his hair. Somebody might have the genes to be tall but suppose they're malnourished as a kid." These are problems that can be taken into account, but there are other, more serious objections. Alec Jeffries of Leicester University, who invented genetic fingerprinting, points out that the tests may violate one of the principles of forensic testing, namely that police should not be able to find out personal or medical information from DNA. He says that many genes involved in physical appearance are also connected with inherited diseases. For example, pigmentation genes are involved in skin cancers, and mutated versions of facial genes could cause congenital abnormalities. "The police have absolutely no right to be gaining that sort of information from the genome," Jeffries says. "One only needs to go back in history to realise the perversions of justice that could be caused. For example, there's been a lot of work trying to pin down sexual orientation - the "gay" genes. One could imagine that that might be quite a useful lead for the police. But is it right for the police to go rummaging in DNA to find out things like that? It's invasion of genetic privacy." Jeffries is also unconvinced by the science. "A cynic would say it's science fiction and it isn't going to work," he says. "With the possible exception of hair colour, the genetic basis of all these traits is simply not understood." Civil liberties group Liberty also has concerns. Spokesman Roger Bingham says: "If it enables them to build up a picture of someone's appearance as an investigative tool, then that's not necessarily a problem. But at the moment, the tests aren't remotely conclusive." His fear is that the police would clutch at straws and bring in suspects based on very flimsy evidence. Perhaps unsurprisingly, the FSS is scathing about the naysayers. Urquhart says: "We are just finding a quick way of getting what normally comes through eyewitness information. I don't really see a difference, except this sort of information might be more reliable. I think if it's used in the investigation of a crime, and it's not giving any evidence that's irrelevant to the crime, I have got no objections." His colleague Kevin Sullivan adds: "Law-abiding citizens don't have anything to worry about. But criminals do." LOAD-DATE: July 31, 2002